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Category Archives: reproducible research
Reproducibility of high resolution reconstruction – one year on
It is about a year since my paper discussing the reproducibility of high resolution reconstructions was finally published, so I thought I should give a full account of what has happened since. Nothing. None of the authors of the papers … Continue reading
Posted in Peer reviewed literature, reproducible research, transfer function
Tagged chironomids
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Making a pollen diagram from Neotoma
Last week I gave a course on R for palaeoecologists covering data handling using tidyverse, reproducibility and some some ordinations and transfer functions. One of the exercises was to download some pollen data from Neotoma and make a pollen diagram. … Continue reading
Tools for a reproducible manuscript
It is all too easy to make a mistake putting a manuscript together: mistranscribe a number, forget to rerun some analyses after the data are revised, or simply bodge the round some numbers. Fortunately it is possible to avoid these … Continue reading
Insist() on the text and numbers agree in Rmarkdown
The manuscript I submitted a long time ago contains multiple sentences where I describe the result with both text and numbers. For example: With a three-year moving average, the correlation is weak (r = 0.21) and not statistically significant (p … Continue reading
Citing R and packages automatically
Almost every manuscript I write has a paragraph that looks something like this: All analyses were done in R version 3.4.4 (R Core Team 2017). Ordinations were fitted with vegan version 2.4-6 (Oksanen et al. 2017) with square-root transformed assemblage … Continue reading
